Detailed information of SNP:
|
SNP ID:
sf0330843315(Gbrowse)
Chromosome: chr03 Position: 30843315 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1404 | 90.10% | 9.90% |
| All Indica | 794 | 99.50% | 0.50% |
| All Japonica | 488 | 72.75% | 27.25% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 209 | 98.09% | 1.91% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 328 | 60.06% | 39.94% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0330843315 | T->C | INTERGENIC | None |