Detailed information of SNP:
|
SNP ID:
sf0330963611(Gbrowse)
Chromosome: chr03 Position: 30963611 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 57.53% | 42.47% |
| All Indica | 791 | 33.75% | 66.25% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 64 | 10.94% | 89.06% |
| Indica I | 373 | 23.32% | 76.68% |
| Indica II | 210 | 52.86% | 47.14% |
| Indica Intermediate | 208 | 33.17% | 66.83% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0330963611 | C->T | LOC_Os03g54020(LOC_Os03g54020.1) | Synonymous |