Detailed information of SNP:
|
SNP ID:
sf0330982183(Gbrowse)
Chromosome: chr03 Position: 30982183 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1289 | 91.85% | 8.15% |
| All Indica | 744 | 99.60% | 0.40% |
| All Japonica | 425 | 92.71% | 7.29% |
| Aus | 67 | 7.46% | 92.54% |
| Indica I | 348 | 99.71% | 0.29% |
| Indica II | 195 | 99.49% | 0.51% |
| Indica Intermediate | 201 | 99.50% | 0.50% |
| Temperate Japonica | 292 | 89.38% | 10.62% |
| Tropical Japonica | 74 | 100.00% | 0.00% |
| Japonica Intermediate | 59 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 39 | 82.05% | 17.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0330982183 | C->T | INTERGENIC | None |