Detailed information of SNP:
|
SNP ID:
sf0331229009(Gbrowse)
Chromosome: chr03 Position: 31229009 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1230 | 83.66% | 16.34% |
| All Indica | 776 | 81.19% | 18.81% |
| All Japonica | 337 | 86.94% | 13.06% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 368 | 95.38% | 4.62% |
| Indica II | 198 | 55.56% | 44.44% |
| Indica Intermediate | 210 | 80.48% | 19.52% |
| Temperate Japonica | 222 | 85.14% | 14.86% |
| Tropical Japonica | 75 | 94.67% | 5.33% |
| Japonica Intermediate | 40 | 82.50% | 17.50% |
| Group VI/Aromatic | 12 | 91.67% | 8.33% |
| Intermediate | 38 | 73.68% | 26.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0331229009 | C->T | INTERGENIC | None |