Detailed information of SNP:
|
SNP ID:
sf0331241860(Gbrowse)
Chromosome: chr03 Position: 31241860 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1311 | 54.92% | 45.08% |
| All Indica | 694 | 26.95% | 73.05% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 1.52% | 98.48% |
| Indica I | 312 | 9.94% | 90.06% |
| Indica II | 208 | 53.37% | 46.63% |
| Indica Intermediate | 174 | 25.86% | 74.14% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 57.50% | 42.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0331241860 | G->A | INTERGENIC | None |