Detailed information of SNP:
|
SNP ID:
sf0331243460(Gbrowse)
Chromosome: chr03 Position: 31243460 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 50.14% | 49.86% |
| All Indica | 799 | 77.47% | 22.53% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 92.53% | 7.47% |
| Indica II | 213 | 49.30% | 50.70% |
| Indica Intermediate | 211 | 79.15% | 20.85% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0331243460 | C->G | LOC_Os03g54970(LOC_Os03g54970.2) | UTR_3_PRIME |
| sf0331243460 | C->G | LOC_Os03g54970(LOC_Os03g54970.1) | UTR_3_PRIME |