Detailed information of SNP:
|
SNP ID:
sf0331249461(Gbrowse)
Chromosome: chr03 Position: 31249461 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1405 | 89.18% | 10.82% |
| All Indica | 792 | 82.45% | 17.55% |
| All Japonica | 490 | 99.18% | 0.82% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 95.73% | 4.27% |
| Indica II | 206 | 59.22% | 40.78% |
| Indica Intermediate | 211 | 81.52% | 18.48% |
| Temperate Japonica | 328 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0331249461 | T->A | LOC_Os03g54980(LOC_Os03g54980.1) | INTRON |