Detailed information of SNP:
|
SNP ID:
sf0331254507(Gbrowse)
Chromosome: chr03 Position: 31254507 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 53.54% | 46.46% |
| All Indica | 794 | 27.71% | 72.29% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 372 | 13.71% | 86.29% |
| Indica II | 213 | 55.40% | 44.60% |
| Indica Intermediate | 209 | 24.40% | 75.60% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 62.50% | 37.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0331254507 | C->T | INTERGENIC | None |