Detailed information of SNP:
|
SNP ID:
sf0331265970(Gbrowse)
Chromosome: chr03 Position: 31265970 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 50.56% | 49.44% |
| All Indica | 798 | 23.43% | 76.57% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 374 | 8.56% | 91.44% |
| Indica II | 213 | 50.23% | 49.77% |
| Indica Intermediate | 211 | 22.75% | 77.25% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 52.50% | 47.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0331265970 | T->C | INTERGENIC | None |