Detailed information of SNP:
|
SNP ID:
sf0331284916(Gbrowse)
Chromosome: chr03 Position: 31284916 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 50.28% | 49.72% |
| All Indica | 798 | 22.68% | 77.32% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 374 | 7.22% | 92.78% |
| Indica II | 213 | 51.17% | 48.83% |
| Indica Intermediate | 211 | 21.33% | 78.67% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 52.50% | 47.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0331284916 | G->A | INTERGENIC | None |