Detailed information of SNP:
|
SNP ID:
sf0331284943(Gbrowse)
Chromosome: chr03 Position: 31284943 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 50.39% | 49.61% |
| All Indica | 797 | 22.96% | 77.04% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 374 | 7.75% | 92.25% |
| Indica II | 212 | 50.94% | 49.06% |
| Indica Intermediate | 211 | 21.80% | 78.20% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0331284943 | C->T | INTERGENIC | None |