Detailed information of SNP:
|
SNP ID:
sf0331303869(Gbrowse)
Chromosome: chr03 Position: 31303869 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1389 | 50.54% | 49.46% |
| All Indica | 770 | 80.13% | 19.87% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 373 | 92.49% | 7.51% |
| Indica II | 195 | 54.36% | 45.64% |
| Indica Intermediate | 202 | 82.18% | 17.82% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 43.90% | 56.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0331303869 | T->C | INTERGENIC | None |