Detailed information of SNP:
|
SNP ID:
sf0331305026(Gbrowse)
Chromosome: chr03 Position: 31305026 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 51.87% | 48.13% |
| All Indica | 797 | 81.30% | 18.70% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 374 | 92.51% | 7.49% |
| Indica II | 212 | 58.96% | 41.04% |
| Indica Intermediate | 211 | 83.89% | 16.11% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0331305026 | A->G | INTERGENIC | None |