Detailed information of SNP:
|
SNP ID:
sf0331355417(Gbrowse)
Chromosome: chr03 Position: 31355417 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1326 | 94.72% | 5.28% |
| All Indica | 768 | 99.22% | 0.78% |
| All Japonica | 445 | 99.78% | 0.22% |
| Aus | 62 | 9.68% | 90.32% |
| Indica I | 365 | 100.00% | 0.00% |
| Indica II | 206 | 97.57% | 2.43% |
| Indica Intermediate | 197 | 99.49% | 0.51% |
| Temperate Japonica | 300 | 99.67% | 0.33% |
| Tropical Japonica | 80 | 100.00% | 0.00% |
| Japonica Intermediate | 65 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 37 | 83.78% | 16.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0331355417 | C->T | INTERGENIC | None |