Detailed information of SNP:
|
SNP ID:
sf0331358245(Gbrowse)
Chromosome: chr03 Position: 31358245 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1413 | 51.73% | 48.27% |
| All Indica | 793 | 25.22% | 74.78% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 374 | 16.84% | 83.16% |
| Indica II | 211 | 27.49% | 72.51% |
| Indica Intermediate | 208 | 37.98% | 62.02% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0331358245 | A->G | INTERGENIC | None |