Detailed information of SNP:
|
SNP ID:
sf0331558328(Gbrowse)
Chromosome: chr03 Position: 31558328 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1366 | 97.14% | 2.86% |
| All Indica | 788 | 100.00% | 0.00% |
| All Japonica | 458 | 92.14% | 7.86% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 100.00% | 0.00% |
| Indica II | 210 | 100.00% | 0.00% |
| Indica Intermediate | 207 | 100.00% | 0.00% |
| Temperate Japonica | 308 | 96.75% | 3.25% |
| Tropical Japonica | 89 | 95.51% | 4.49% |
| Japonica Intermediate | 61 | 63.93% | 36.07% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 92.31% | 7.69% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0331558328 | G->A | INTERGENIC | None |