Detailed information of SNP:
|
SNP ID:
sf0331648669(Gbrowse)
Chromosome: chr03 Position: 31648669 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1366 | 97.66% | 2.34% |
| All Indica | 787 | 100.00% | 0.00% |
| All Japonica | 458 | 93.23% | 6.77% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 100.00% | 0.00% |
| Indica II | 205 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 306 | 97.71% | 2.29% |
| Tropical Japonica | 89 | 95.51% | 4.49% |
| Japonica Intermediate | 63 | 68.25% | 31.75% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0331648669 | C->T | LOC_Os03g55600(LOC_Os03g55600.1) | INTRON |