Detailed information of SNP:
|
SNP ID:
sf0331661138(Gbrowse)
Chromosome: chr03 Position: 31661138 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 50.46% | 49.54% |
| All Indica | 799 | 79.10% | 20.90% |
| All Japonica | 497 | 1.01% | 98.99% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 87.73% | 12.27% |
| Indica II | 213 | 64.32% | 35.68% |
| Indica Intermediate | 211 | 78.67% | 21.33% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0331661138 | C->T | INTERGENIC | None |