Detailed information of SNP:
|
SNP ID:
sf0331663726(Gbrowse)
Chromosome: chr03 Position: 31663726 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1234 | 81.04% | 18.96% |
| All Indica | 618 | 63.27% | 36.73% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 294 | 62.24% | 37.76% |
| Indica II | 177 | 70.62% | 29.38% |
| Indica Intermediate | 147 | 56.46% | 43.54% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 84.21% | 15.79% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0331663726 | G->A | INTERGENIC | None |