Detailed information of SNP:
|
SNP ID:
sf0331709783(Gbrowse)
Chromosome: chr03 Position: 31709783 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 50.04% | 49.96% |
| All Indica | 799 | 20.65% | 79.35% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 375 | 12.80% | 87.20% |
| Indica II | 213 | 34.74% | 65.26% |
| Indica Intermediate | 211 | 20.38% | 79.62% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0331709783 | C->A | LOC_Os03g55704(LOC_Os03g55704.1) | INTRON |