Detailed information of SNP:
|
SNP ID:
sf0331763450(Gbrowse)
Chromosome: chr03 Position: 31763450 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1268 | 70.35% | 29.65% |
| All Indica | 652 | 43.10% | 56.90% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 295 | 27.46% | 72.54% |
| Indica II | 183 | 58.47% | 41.53% |
| Indica Intermediate | 174 | 53.45% | 46.55% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 89.47% | 10.53% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0331763450 | C->T | INTERGENIC | None |