Detailed information of SNP:
|
SNP ID:
sf0331766777(Gbrowse)
Chromosome: chr03 Position: 31766777 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1406 | 98.51% | 1.49% |
| All Indica | 790 | 97.97% | 2.03% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 63 | 93.65% | 6.35% |
| Indica I | 368 | 98.10% | 1.90% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 209 | 98.09% | 1.91% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0331766777 | A->T | INTERGENIC | None |