Detailed information of SNP:
|
SNP ID:
sf0331774287(Gbrowse)
Chromosome: chr03 Position: 31774287 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 55.96% | 44.04% |
| All Indica | 797 | 22.96% | 77.04% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 12.53% | 87.47% |
| Indica II | 212 | 41.04% | 58.96% |
| Indica Intermediate | 210 | 23.33% | 76.67% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0331774287 | A->C | LOC_Os03g55820(LOC_Os03g55820.1) | UTR_5_PRIME |