Detailed information of SNP:
|
SNP ID:
sf0331863790(Gbrowse)
Chromosome: chr03 Position: 31863790 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 54.94% | 45.06% |
| All Indica | 799 | 94.87% | 5.13% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 87.32% | 12.68% |
| Indica Intermediate | 211 | 93.84% | 6.16% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 43.90% | 56.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0331863790 | A->G | LOC_Os03g55990(LOC_Os03g55990.2) | INTRON |
| sf0331863790 | A->G | LOC_Os03g55990(LOC_Os03g55990.1) | UTR_3_PRIME |