Detailed information of SNP:
|
SNP ID:
sf0331902236(Gbrowse)
Chromosome: chr03 Position: 31902236 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1363 | 63.98% | 36.02% |
| All Indica | 798 | 96.99% | 3.01% |
| All Japonica | 442 | 0.90% | 99.10% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 92.02% | 7.98% |
| Indica Intermediate | 210 | 98.10% | 1.90% |
| Temperate Japonica | 292 | 0.34% | 99.66% |
| Tropical Japonica | 86 | 1.16% | 98.84% |
| Japonica Intermediate | 64 | 3.12% | 96.88% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0331902236 | T->C | INTERGENIC | None |