Detailed information of SNP:
|
SNP ID:
sf0331930462(Gbrowse)
Chromosome: chr03 Position: 31930462 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1371 | 80.31% | 19.69% |
| All Indica | 753 | 75.17% | 24.83% |
| All Japonica | 497 | 84.71% | 15.29% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 365 | 90.14% | 9.86% |
| Indica II | 186 | 33.87% | 66.13% |
| Indica Intermediate | 202 | 86.14% | 13.86% |
| Temperate Japonica | 335 | 80.00% | 20.00% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 82.50% | 17.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0331930462 | T->C | INTERGENIC | None |