Detailed information of SNP:
|
SNP ID:
sf0331965102(Gbrowse)
Chromosome: chr03 Position: 31965102 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1344 | 58.71% | 41.29% |
| All Indica | 726 | 95.87% | 4.13% |
| All Japonica | 497 | 0.80% | 99.20% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 327 | 96.33% | 3.67% |
| Indica II | 208 | 95.19% | 4.81% |
| Indica Intermediate | 191 | 95.81% | 4.19% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0331965102 | T->C | INTERGENIC | None |