Detailed information of SNP:
|
SNP ID:
sf0332066031(Gbrowse)
Chromosome: chr03 Position: 32066031 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1403 | 50.46% | 49.54% |
| All Indica | 783 | 87.61% | 12.39% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 369 | 86.18% | 13.82% |
| Indica II | 211 | 89.57% | 10.43% |
| Indica Intermediate | 203 | 88.18% | 11.82% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0332066031 | A->T | INTERGENIC | None |