Detailed information of SNP:
|
SNP ID:
sf0332107804(Gbrowse)
Chromosome: chr03 Position: 32107804 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 53.67% | 46.33% |
| All Indica | 799 | 91.99% | 8.01% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 96.53% | 3.47% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 211 | 81.04% | 18.96% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0332107804 | A->T | LOC_Os03g56340(LOC_Os03g56340.1) | Synonymous |