Detailed information of SNP:
|
SNP ID:
sf0332221943(Gbrowse)
Chromosome: chr03 Position: 32221943 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1395 | 97.56% | 2.44% |
| All Indica | 775 | 95.74% | 4.26% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 370 | 98.11% | 1.89% |
| Indica II | 212 | 97.64% | 2.36% |
| Indica Intermediate | 193 | 89.12% | 10.88% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0332221943 | G->A | LOC_Os03g56572(LOC_Os03g56572.1) | Synonymous |