Detailed information of SNP:
|
SNP ID:
sf0332222171(Gbrowse)
Chromosome: chr03 Position: 32222171 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1261 | 71.93% | 28.07% |
| All Indica | 645 | 46.51% | 53.49% |
| All Japonica | 495 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 272 | 26.10% | 73.90% |
| Indica II | 182 | 65.38% | 34.62% |
| Indica Intermediate | 191 | 57.59% | 42.41% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 77.50% | 22.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0332222171 | G->A | LOC_Os03g56572(LOC_Os03g56572.1) | INTRON |