Detailed information of SNP:
|
SNP ID:
sf0332449243(Gbrowse)
Chromosome: chr03 Position: 32449243 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1388 | 55.69% | 44.31% |
| All Indica | 772 | 88.86% | 11.14% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 64 | 95.31% | 4.69% |
| Indica I | 362 | 87.57% | 12.43% |
| Indica II | 209 | 91.39% | 8.61% |
| Indica Intermediate | 201 | 88.56% | 11.44% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0332449243 | C->G | INTERGENIC | None |