Detailed information of SNP:
|
SNP ID:
sf0332468841(Gbrowse)
Chromosome: chr03 Position: 32468841 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 55.57% | 44.43% |
| All Indica | 798 | 95.74% | 4.26% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 374 | 96.79% | 3.21% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 92.89% | 7.11% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0332468841 | G->A | INTERGENIC | None |