Detailed information of SNP:
|
SNP ID:
sf0332483171(Gbrowse)
Chromosome: chr03 Position: 32483171 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 60.54% | 39.46% |
| All Indica | 795 | 96.23% | 3.77% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 374 | 97.33% | 2.67% |
| Indica II | 212 | 95.75% | 4.25% |
| Indica Intermediate | 209 | 94.74% | 5.26% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0332483171 | C->T | INTERGENIC | None |