Detailed information of SNP:
|
SNP ID:
sf0332491598(Gbrowse)
Chromosome: chr03 Position: 32491598 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1412 | 87.32% | 12.68% |
| All Indica | 792 | 86.74% | 13.26% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 374 | 90.11% | 9.89% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 205 | 73.66% | 26.34% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0332491598 | A->G | INTERGENIC | None |