Detailed information of SNP:
|
SNP ID:
sf0332493654(Gbrowse)
Chromosome: chr03 Position: 32493654 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1409 | 94.54% | 5.46% |
| All Indica | 789 | 90.49% | 9.51% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 91.69% | 8.31% |
| Indica II | 212 | 95.28% | 4.72% |
| Indica Intermediate | 204 | 83.33% | 16.67% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0332493654 | A->G | INTERGENIC | None |