Detailed information of SNP:
|
SNP ID:
sf0332521385(Gbrowse)
Chromosome: chr03 Position: 32521385 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1406 | 94.52% | 5.48% |
| All Indica | 786 | 90.59% | 9.41% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 369 | 92.41% | 7.59% |
| Indica II | 210 | 96.67% | 3.33% |
| Indica Intermediate | 207 | 81.16% | 18.84% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0332521385 | A->G | INTERGENIC | None |