Detailed information of SNP:
|
SNP ID:
sf0332913173(Gbrowse)
Chromosome: chr03 Position: 32913173 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 52.59% | 47.41% |
| All Indica | 793 | 90.16% | 9.84% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 66 | 10.61% | 89.39% |
| Indica I | 374 | 97.06% | 2.94% |
| Indica II | 208 | 77.40% | 22.60% |
| Indica Intermediate | 211 | 90.52% | 9.48% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 37 | 45.95% | 54.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0332913173 | A->G | INTERGENIC | None |