Detailed information of SNP:
|
SNP ID:
sf0332915540(Gbrowse)
Chromosome: chr03 Position: 32915540 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 58.49% | 41.51% |
| All Indica | 797 | 94.98% | 5.02% |
| All Japonica | 497 | 8.85% | 91.15% |
| Aus | 64 | 6.25% | 93.75% |
| Indica I | 375 | 97.07% | 2.93% |
| Indica II | 211 | 92.89% | 7.11% |
| Indica Intermediate | 211 | 93.36% | 6.64% |
| Temperate Japonica | 335 | 9.85% | 90.15% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0332915540 | C->T | INTERGENIC | None |