Detailed information of SNP:
|
SNP ID:
sf0332987801(Gbrowse)
Chromosome: chr03 Position: 32987801 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1227 | 63.41% | 36.59% |
| All Indica | 610 | 29.02% | 70.98% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 243 | 21.40% | 78.60% |
| Indica II | 182 | 27.47% | 72.53% |
| Indica Intermediate | 185 | 40.54% | 59.46% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 61.54% | 38.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0332987801 | C->T | INTERGENIC | None |