Detailed information of SNP:
|
SNP ID:
sf0333030490(Gbrowse)
Chromosome: chr03 Position: 33030490 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 53.00% | 47.00% |
| All Indica | 799 | 90.99% | 9.01% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 66 | 0.00% | 100.00% |
| Indica I | 375 | 94.93% | 5.07% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 81.52% | 18.48% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0333030490 | C->A | LOC_Os03g58030(LOC_Os03g58030.1) | Non-Synonymous SNP |