Detailed information of SNP:
|
SNP ID:
sf0333071567(Gbrowse)
Chromosome: chr03 Position: 33071567 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1368 | 82.89% | 17.11% |
| All Indica | 797 | 99.87% | 0.13% |
| All Japonica | 449 | 49.00% | 51.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 297 | 33.00% | 67.00% |
| Tropical Japonica | 86 | 87.21% | 12.79% |
| Japonica Intermediate | 66 | 71.21% | 28.79% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0333071567 | C->G | INTERGENIC | None |