Detailed information of SNP:
|
SNP ID:
sf0333113079(Gbrowse)
Chromosome: chr03 Position: 33113079 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1351 | 94.89% | 5.11% |
| All Indica | 773 | 94.18% | 5.82% |
| All Japonica | 458 | 94.98% | 5.02% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 367 | 95.37% | 4.63% |
| Indica II | 201 | 99.00% | 1.00% |
| Indica Intermediate | 205 | 87.32% | 12.68% |
| Temperate Japonica | 312 | 95.83% | 4.17% |
| Tropical Japonica | 84 | 95.24% | 4.76% |
| Japonica Intermediate | 62 | 90.32% | 9.68% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 97.44% | 2.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0333113079 | C->T | INTERGENIC | None |