Detailed information of SNP:
|
SNP ID:
sf0333126244(Gbrowse)
Chromosome: chr03 Position: 33126244 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1326 | 96.08% | 3.92% |
| All Indica | 784 | 98.72% | 1.28% |
| All Japonica | 422 | 95.02% | 4.98% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 368 | 98.64% | 1.36% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 204 | 97.55% | 2.45% |
| Temperate Japonica | 293 | 97.95% | 2.05% |
| Tropical Japonica | 75 | 94.67% | 5.33% |
| Japonica Intermediate | 54 | 79.63% | 20.37% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 39 | 89.74% | 10.26% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0333126244 | G->A | INTERGENIC | None |