Detailed information of SNP:
|
SNP ID:
sf0333148796(Gbrowse)
Chromosome: chr03 Position: 33148796 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1400 | 51.50% | 48.50% |
| All Indica | 780 | 81.54% | 18.46% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 367 | 79.84% | 20.16% |
| Indica II | 206 | 89.32% | 10.68% |
| Indica Intermediate | 207 | 76.81% | 23.19% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0333148796 | C->T | LOC_Os03g58220(LOC_Os03g58220.1) | INTRON |