Detailed information of SNP:
|
SNP ID:
sf0333166859(Gbrowse)
Chromosome: chr03 Position: 33166859 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 56.25% | 43.75% |
| All Indica | 798 | 88.85% | 11.15% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 374 | 91.98% | 8.02% |
| Indica II | 213 | 92.02% | 7.98% |
| Indica Intermediate | 211 | 80.09% | 19.91% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0333166859 | G->A | INTERGENIC | None |