Detailed information of SNP:
|
SNP ID:
sf0333167436(Gbrowse)
Chromosome: chr03 Position: 33167436 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 92.67% | 7.33% |
| All Indica | 799 | 98.50% | 1.50% |
| All Japonica | 497 | 86.32% | 13.68% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 92.84% | 7.16% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 68 | 47.06% | 52.94% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0333167436 | G->T | INTERGENIC | None |