Detailed information of SNP:
|
SNP ID:
sf0333171792(Gbrowse)
Chromosome: chr03 Position: 33171792 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 56.03% | 43.97% |
| All Indica | 799 | 88.61% | 11.39% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 91.20% | 8.80% |
| Indica II | 213 | 92.02% | 7.98% |
| Indica Intermediate | 211 | 80.57% | 19.43% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0333171792 | C->T | INTERGENIC | None |