Detailed information of SNP:
|
SNP ID:
sf0333184742(Gbrowse)
Chromosome: chr03 Position: 33184742 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 51.52% | 48.48% |
| All Indica | 798 | 88.72% | 11.28% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 374 | 91.98% | 8.02% |
| Indica II | 213 | 92.02% | 7.98% |
| Indica Intermediate | 211 | 79.62% | 20.38% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0333184742 | T->C | INTERGENIC | None |