Detailed information of SNP:
|
SNP ID:
sf0333192147(Gbrowse)
Chromosome: chr03 Position: 33192147 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 54.31% | 45.69% |
| All Indica | 796 | 29.15% | 70.85% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 374 | 14.44% | 85.56% |
| Indica II | 211 | 51.66% | 48.34% |
| Indica Intermediate | 211 | 32.70% | 67.30% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0333192147 | C->T | LOC_Os03g58270(LOC_Os03g58270.1) | Non-Synonymous SNP |